Data for Alfaro et al. 2012

• 500-locus fish enrichment probes (fasta) fish-500-loci-enrichment-probes.fasta.gz
• Contigs assembled from enrichment data (fasta) fish-500-loci-enrichment-probes.fasta.gz
• Enriched contigs matching UCE loci (lastz) fish-lastz-probe-matches-to-uce-contigs.tar.gz
• Enriched contigs matching UCE loci (sqlite) fish-probe-matches-to-uce-contigs.sqlite.gz
• Contigs matching UCE loci from genome-enabled taxa (lastz) fish-lastz-probe-matches-to-genome-enabled.tar.gz
• Contigs matching UCE loci from genome-enabled taxa (sqlite) fish-probe-matches-to-genome-enabled.sqlite.gz
• Nexus files from MAFFT (without missing data; nexus) fish-nexus-files-from-uce-alignment.tar.gz
• Nexus files from MAFFT (with missing data; nexus) fish-nexus-files-with-gaps-from-uce-alignment.tar.gz
• Nexus file for mrbayes fish-nexus-file-for-mrbayes.nexus.gz
• Phylip file for raxml fish-phylip-file-for-raxml.phylip.gz
• Partitioned phylip file for raxml fish-partitioned-phylip-file-for-raxml.phylip.gz
• Partitioned for phylip file for raxml fish-partitioned-phylip-file-for-raxml-partitions.txt.gz
• Phylip files for loci containing Polypterus and Acipenser for CloudForest fish-phylip-files-for-cloudforest-with-pol_sen-and-aci_ful.tar.gz
• Genetrees from CloudForest fish-genetree-results-from-cloudforest.tre.gz
• Bootreps (1000) from CloudForest fish-genetree-bootrep-results-from-cloudforest.tar.gz